Skip to main content

Ctrl+K

A hands-on introduction on molecular phylogenetic studies

Introduction

Before starting, why phylogenetic inference?
What is a phylogenetic tree?
The root of the tree
How to write trees

Phylogenetic analyses in a nutshell

Main steps for phylogenetic reconstruction
Dependencies and softwares

Species selection

Species selection (step 1)

A phylogenetic pipeline

Align (step 2)
Trim alignment of irrelevant or positions/columns that might add noise (step 3)
Phylogenetic analyses (step 4)

Tree thinking

Interpreting the tree (step 5)

Conclusion

Conclusion
Summary
Further reading

Repository
Open issue

Index

By Miguel M. Sandin

© Copyright 2022.